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PUBLICATIONS OF DR. ALEX LIMANSKII
LIST OF MAIN PUBLICATIONS
1. English Russian Limanskaya L., Limanskii A. S-DNA, oversupercoiled with DNA 1.94 – 2.19 A rise per base pair// Molecular Biology. – 2006. – V. 40, N 1. – P. 107-120.
2. English Limanskaya O.Y., Limanskaya L.A., Limanskii A.P. Compaction of supercoiled DNA on modified aminomica // Biopolymers and Cell. – 2006. – V. 22, N 1. – P. 18-28.
3. English Russian Limanskii A. Visualization of amplicons after polymerase chain reaction // Biophysics. – 2005. – V. 50, N 6. – P. 879-883.
4. English Limanskii A. Visualization of RNA transcripts by atomic force microscopy // Cytology and Genetics. – 2007. – V. 41, N 2. – P. 76-81.
5. English Russian Limanskii A. Functionalization of aminomodified probes for atomic force microscopy// Biophysics. – 2006. – V. 51, N 2. – P. 186-195.
6. English Russian Limanskaya L., Limanskii A. Compaction of single supercoiled DNA molecules adsorbed onto amino mica// Russian J. of Bioorganic Chemistry. – 2006. – V. 32, N5. – P. 494-510.
7. English Russian Limanskii A. Visualization of DNA – T7 RNA polymerase by atomic force microscopy // Biopolymers and Cell. – 2007. – V. 23, N 1. – P. 3-13.
8. English Limansky A., Shlyakhtenko L., Schaus S., Henderson E., Lyubchenko Y. Aminomodified probes for atomic force microscopy // Probe Microscopy. – 2002. – V. 2, N 3-4. – P. 227-234.
9. English Russian Limanskaya O.Yu., Limanskii A.P. Visualization of elongation complexes for T7 RNA polymerase by atomic force microscopy// Molecular Biology. – 2008. – V. 42, N 3. – P. 469–477
10. English Limanskaya O., Limanskii A. Imaging compaction of single supercoiled DNA molecules by atomic force microscopy// General Physiology and Biophysics. – 2008. – V. 27, N4. – P. 322-336.
11. English Limanskaya O.Yu., Limanskii A.P. Distribution of hairpin-loop structures in plasmids of anthrax infectious agent// Biopolymers and Cell. – 2008. – V. 24, N 6. – P. 463-469.
12. Russian O.Yu. Limanskaya, A.P. Limanskii. Distribution of potentially hairpin-loop structures in the genome of bovine retroviruses // Problems of Virology. – 2009. – V. 54, N 4. – P. 27-32.
13. English Russian Limanskaya O., Mukhina T., Stepanshina V., Shemyakin I., Wu X., Zhang J., Fesenko T., Pokrovskiy V., Limanskii A. Identification of wild-type Mycobacterium tuberculosis isolates and point mutations associated with isoniazid resistance // Molecular Biology. – 2010. – V. 44, N 4. – P. 559–567.
14. English O.Yu. Limanskaya, T.N. Fesenko, V.A. Pokrovskiy, T.N. Mukhina, V.N. Stepanshina, I.G. Shemyakin, A.P. Limanskii. Characterization of oligonucleotides with LNA monomers for PCR detection of point mutations in Mycobacterium tuberculosis genome // Biochemistry (Moscow). Supplement Series B: Biomedical Chemistry. – 2011. – V. 5, N 2. – P. 144–151.
15. English O.Yu. Limanskaya, A.P. Limanskii. Molecular technologies used in detecting of sensitive and isoniazid-resistant Mycobacterium tuberculosis // Cytology and Genetics. – 2011. – Vol. 45, N 6. – P. 362–372.
16. Russian O.Yu. Limanskaia, A.P. Limanskii. Nanomanipulation with biomacromolecules and molecular mechanisms of DNA compaction // J. of National Academy of Medical Sciences of Ukraine. – 2011. – V. 17, N 4. – P. 313-329.
17. Ukrainian O.Yu. Limanskaya, L.A. Murtazaeva, A.P. Limanskii. Species-spesific detection of causative agent of anthrax // Biotechnology. – 2012. – V. 5, N 1. – P. 92-99.
18. English Russian O. Limanskaya, A. Limanskii. Study of elongation complexes for T7 RNA polymerase // Biophysics. – 2012. – V. 57, N 4. – P. 428-441.
19. Ukrainian Limanskaya O., Limanskii A. DNA technologies for detection and genotyping pathogens in molecular medicine and veterinary // J. of National Academy of Medical Sciences. - 2012. – V. 18, N 3. – P. 307-325.
20. Ukrainian Limanskaya O., Murtazaeva L., Klee S., Limanskii A. Detection of anthrax causative agent by real-time polymerase chain reaction // Biotechnology. – 2012. – V. 5, N 5. – P. 65-71.
21. English Russian O. Limanskaya, L. Murtazaeva, A. Limanskii. Search for the new potential RNA thermometers in the genome of Salmonella enterica // Microbiology. – 2013. – V. 82, N 1. – P. 69-78.
22. Ukrainian O.Yu. Limanskaya, L.A. Murtazaeva, S. Klee, A.P. Limanskii. Molecular technologies for detection of anthrax causative agent by PCR of different formats // Biotechnology. – 2013. – N 3. – P. 86-96.
23. Ukrainian O.Yu. Limanskaya, L.A. Murtazaeva, S. Klee, A.P. Limanskii. Discrimination of anthrax causative agent from closely related species // J. of National Academy of Medical Sciences of Ukraine. – 2013. – V. 19, N 1. – P. 23-33.
24. English Ukrainian O.Yu. Limanskaya, L.A. Murtazaeva, and A.P. Limanskii. Potential thermosensitive riboswitches in the genome of Salmonella // Cytology and Genetics. – 2013. – V. 47, N 5. – P. 268–275.
1. Limanskii A., Sheina G., Stepanova T., Blagoi Yu. Studies of cationic and neutral forms of acridine compounds interaction with nucleic acids // Studia biophysica. – 1984. – V. 100, N 3. – P. 187-194.
2. Gerasuta N.N., Kratenko I.S., Limanskaya O.Yu., Limanskii A.P., Odrazhij N.K. Detection of hepatitis B virus by polymerase chain reaction //Ultrasound Prenatal Diagnostics. – 1994. – N 4-5. – P. 85-89.
3. Limanskii A.P., Limanskaya O.Yu. Polymerase chain reaction with modified primers // Ultrasound Prenatal Diagnostics. – 1995. – N 6-7. – P. 71-77.
4. Limanskii A.P. Specificity of ligand interaction with nucleic acids. Influence of anthracycline antibiotics on molecular melting of DNA with high heterogeneity level // Ultrasound Prenatal Diagnostics. – 1997. – N 8-9. – P. 209-217.
5. Limanskii A.P. Specificity of ligand interaction with nucleic acids. Melting of polynucleotides – anthracycline antibiotics complexes // Ultrasound Prenatal Diagnostics. – 1997. – N 8-9. – P. 218-222.
6. Limanskii A.P. Detection of human cytomegalovirus by polymerase chain reaction // Ultrasound Prenatal Diagnostics. – 1997. – N 8-9. – P. 223-230.
7. Busol V.A., Limanskaya O.Yu., Limanskii A.P., Tsimbal V.I. Detection of bovine leukaemia virus by polymerase chain reaction //Veterinary Medicine. – 1998. – V. 74. – P. 35-44.
8. Limanskaya O.Yu., Limanskii A.P., Nehoroshih E.M., Busol V.A., Tsimbal V.I. Detection of bovine leukaemia virus by polymerase chain reaction // Agrarian Sciences. – 1999. – N 9. – P. 35-39.
9. Limanskaya O., Limanskii A. Universal test-system for PCR sexing of cattle, sheep, goat and pig embryos // J. Biology of Reproduction. – 1999. – V. 60, Suppl. 1. – P. 195.
10. Limanskii A.P., Limanska O.Yu., Bezugly N.D. Design of PCR test-system for sexing of farm animal embryos // Scientific Bulletin of Institute of Cattle Breeding. – 1999. – V. 75. – P. 160-165.
11. Busol V.A., Limanskaya O.Yu., Limanskii A.P., Tsimbal V.I. PCR test-system for detection of bovine leukaemia virus // Veterinary. – 1999. – N 6. – P. 27-32.
12. Limanskaya O.Yu., Limanskii A.P. Test-system for genotyping cattle embryos // Biological Bulletin. – 1999. – N 2-3. – P. 102-106.
13. Limanskaya O., Limanskii A., Bezugly N. Preimplantation embryo sexing of farm animals by polymerase chain reaction // Russian J. of Biotechnology. – 2000. – N 2. – P. 66-72.
14. Limanskii A.P., Limanskaya O.Yu., Belozerskii V.I., Timchenko E.N., Pokhil S.I. Development and testing of polymerase chain reaction for detection of meningococcal infectious agent // Clin. Lab. Diagn. – 2000. – N 4. – P. 44-47.
15. Krasovskii V.V., Pokhil S.I., Limanskii A.P., Limanskaya O.Yu., Timchenko E.N. Development and testing of polymerase chain reaction for detection of Listeria pathogen // Clin. Lab. Diagn. – 2000. – N 6. – P. 37-41.
16. Limanskii A.P. Visualization of cruciform structure in supercoiled DNA by atomic force microscopy // Biophysics. – 2000. – V. 45, N 6. – P. 1007-1011.
17. Limanskii A.P., Limanskaya O.Yu. The methods of molecular genetics as the basis for the programs of bovine leukosis eradication // Russian J. of Biotechnology. – 2001. – N 3. – P. 187-193.
18. Limanskaya O.Yu., Limanskii A.P. Embryo sexing and bovine leukemia virus detection by polymerase chain reaction // Agrarian Sciences. – 2001. – N 3. – P. 34-39.
19. Limanskii A.P. Study of amino modified mica as a substrate for atomic force microscopy of nucleic acids // Biopolymers and Cell. – 2001. – V. 17, N 4. – P. 292-297.
20. Limanskii A.P. Identification of hypervariable and conservative fragments of Listeria sp. genome // J. of Microbiology, Epidemiology and Immunobiology. – 2001. – N 5. – P. 62-65.
21. Limanskii A.P. Study of aminomodified probes for atomic force microscopy of biomolecules // Biopolymers and Cell. – 2002. – V. 18, N 1. – P. 62-70.
22. Limanskii A., Shapoval V., Volyanska N., Alsaban A., Kuchma I. Genome analysis and design of primer sets for detection and typing of Listeria sp. by polymerase chain reaction // Microbiol. J. – 2002. – V. 64, N 4. – P. 39-49.
23. Limanskii A.P., Limanskaya O.Yu. Comparison of primer sets for detection of bovine leukemia virus by polymerase chain reaction // Bulletin of the Veterinary Institute in Pulawy (Poland). – 2002. – V. 46, N 1. – P. 27-36.
24. Limanskaya O.Yu., Limanskii A.P. Analysis of primer sets for PCR detection of proviral DNA of bovine leukemia virus and human immunodeficiency virus // Biopolymers and Cell. – 2002. – V. 18, N 2. – P. 124-130.
25. Limanskii A.P. Study of cruciform structure in supercoiled pUC8 plasmid DNA by atomic force microscopy and computer modeling // Biopolymers and Cell. – 2002. – V. 18, N 5. – P. 401-405.
26. Limanskii A.P., Limanskaya O.Yu. Atomic force microscopy: from visualization of DNA and cells to measurement of intermolecular interaction forces // Biological Bulletin. – 2001. – V. 5, N 1-2. – P. 124-132.
27. Lymans’kiy A.P., Lymans’ka O.Yu. Study of microorganisms genome DNA by atomic force microscopy // Cytology and Genetics. – 2002. – V. 36, N 4. – P. 30-36.
28. Limanskii A.P., Volyanskaya N.P., Limanskaya O.Yu., Potejko P.I., Lyapunova A.D., Pasechnik T.O. Analysis of highly conservative IS6110 insertion elements in Mycobacterium tuberculosis genome // Medical Bulletin of Bukovina. – 2002. – V. 6, N 3. – P. 174-177.
29. Lymans’kyy A.P., Limans’ka O.Yu. Visualization of cyanobacteria by atomic force microscopy // Cytology and Genetics. – 2003. – V. 37, N 1. – P. 68-71.
30. Limanskii A. Atomic force microscopy: from DNA and protein imaging to measurement of intermolecular interactions force // Advances in Current Biology. – 2003. – V. 123, N 6. – P. 531-542.
31. A. Limanskii, L. Geue, O. Limanskaya, D. Beier. Typing of bovine leukemia virus circulated in Ukraine // Problems of Virology. – 2004. – N 1. – P. 39-44.
32. Limanskii A., Limanskaya O. Inverted repeats: computer analysis of microorga- nisms genome and imaging of cruciform structure in DNA by atomic force microsco-py // In Bioengineered and Bioinspired Systems. Editor A. Rodriguez-Vazquez. Proceedings of SPIE. – 2003. – V. 5119. – P. 347-358.
33. Klimova E.Μ., Limanskii A.P., Rymarenko E.V., Borisova E.L. Rate estimation of viral persistence for patients with myasthenia for different methods of investigation // Ultrasound Prenatal Diagnostics. Suppl. – 2000. – P. 246-248.
34. Limanskii A., Limanskaya O., Volyanskii Yu. Computerized analysis of inverted repeats in Mycobacterium tuberculosis genome // J. of Microbiology, Epidemiology and Immunobiology. – 2004. – N 5. – P. 48-52.
35. Limanskii A., Minukhin V., Limanskaya O., Pavlenko N., Mishina M., Tsyganenko A. Species-specific detection of Proteus vulgaris and Proteus mirabilis by polymerase chain reaction // J. of Microbiology, Epidemiology and Immunobiology. – 2005. – N 3. – P. 33-39.
36. Limanskii A. Oversupercoiling and compaction of supercoiled DNA // Cytology and Genetics. – 2005. – V. 39, N 2. – P. 64-71.
37. Limanskaya O., Rola M., Bicka L., Kuzmak J., Limanskii A. Detection of bovine immunodeficiency virus proviral DNA by polymerase chain reaction // Problems of Virology. – 2005. – N 2. – P. 38-43.
38. Limanskaya O., Limanskaya L., Limanskii A. S-DNA is oversupercoiled macromolecule with ~2 A rise per base pair // Biopolymers and Cell. – 2005. – V. 21, N 6. – P. 515-524.
39. Limanskii A. Amino modified probes with covalently bound molecules for atomic force microscopy // Cytology and Genetics. – 2006. – V. 40, N 1. – Ρ. 84-93.
40. Limanskii A. Visualization of bacteriophage T7 RNA polymerase complexes with DNA template under transcription elongation // Ukr. Biochem. J. – 2007. – V. 79, N 1. – P. 94-103.
41. Limanskii A. Compaction of single molecules of supercoiled DNA: from duplex to minitoroidaland spheroidal conformations // Biophysics. – 2007. – V. 52, N 2. – P. 252-260.
42. O. Limanskaya, M. Rola, L. Bicka, J. Kuzmak, Yu. Volyanskii, N. Puguch, S. Novikov, A. Limanskii. Amplification of bovine immunodeficiency virus proviral DNA in experimentally infected animals // Microbiol. J. – 2007. – V. 69, N 1. – P. 52-60.
43. A.P. Limanskii, O.Yu. Limanskaya. Genus-specific and species-specific detection of Proteus bacteria // Biological Bulletin. – 2006. – V. 10, N 1. – P. 96-101.
44. O.Yu. Limanskaya, A.P. Limanskii. Markers for species-specific detection of bacteria from Bacillus cereus group // J. of Microbiology, Epidemiology and Immunobiology. – 2008. – N 3. – P. 20-26.
45. O.Yu. Limanskaya, A.P. Limanskii. Distribution of potentially hairpin-loop structures in the genome of bovine retroviruses // Problems of Virology. – 2009. – V. 54, N 4. – P. 27-32.
46. O.Yu. Limanskaya, T.N. Mukhina, V.N. Stepanshina, I.G. Shemyakin, A.P. Limanskii Detection of wild type isolates and isoniazid-resistant mycobacteria tuberculosis // Tuberculosis and Lung Diseases. – 2010. – N 9. – P. 45-51.
47. O.Yu. Limanskaya, A.P. Limanskii. Distribution of inverted repeats in the coronaviruses genome // Biological Bulletin. – 2009. – V. 13, N 1-2. – P 88-101.
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